So had a few weeks to test this out and compare (1 of those weeks being in Moab). The bored out 62mm throttle body on my wifes Jeep feels a little more "eager" in the low RPM's but thats about the only difference compared to the 4.0 throttle thats on my Jeep. We even did a straight out drag race and in first and second gears my wife jumped a couple feet in front of me, but by 3rd, 4th, and 5th, she just maintained that 4-5 foot lead all the way to 70 mph. On the Freeway they accelerated (what little acceleration you get on the freeway with 32's) exactly the same.
So really it is nice as it does feel a bit more eager in the bottom end, but I don't plan on doing it to my 4.0 TB. Maybe you would notice it more if you had other mods to compliment it. I have the Ford injectors in both Jeeps, and have upgraded the air filters, but thats it.
I would say if you can pick up a 4.0 TB for less than $20-30 bucks, go that route, but if you can't find one, $70 isn't too bad to have your 2.5 TB bored out.