It's a slippery slope to power up the 4 banger. If you accept defeat now and want to enjoy slower speeds, any gain with mods will feel that much better
If you speed is all you need, 1. be ready for some poor mpg (as a brick is not aero dynamic)
, and 2. I would persue (as mentioned) getting what is right from the dealer and get your 6 cyclinder.
The performance modifications for the 4.0 engine (cams, headers, reprogrammers, etc.) are far more dramatic and expensive, whereas they're far and few between for our 2.5's. For me, low and slow is expected as is the application of most 4x4s. It's to get over ruff terrian, not as much to fly down the freeway. The 6 cyclinder will propell you, but at a higher MPG then any other vehicle. I hate to be blunt, but I feel I need to be straight.
I've done the throttle body swap off a 4.0 6cyc, and it did little to improve my top end (if not weakend it), but much to my low end power, so I don't stall on hills as often. The fact is now there's soo much air, the engine starves for fuel. The fuel injectors and fuel pressure regulator would need to be replaced to take advantage of the extra air for once I crank the pedal to the floor. To that extent, the computer will need to be re-adjust as any major changes will cause the computers emission controlls to counteract; unless the computer can be altered by either program or modifing sensor inputs. Again, It's a slippery slope to power up the 4 banger.
Hope you enjoy Jeeping and everything works out as you need.