I use the 62mm TB and I haven't noticed any idling problems with it (iridium plugs did seem to affect idle for a while, though). So, I'd say the 62mm is "ok." Course, your standard, smaller (56mm?) 4.0L TB on a 2.5L might work "
more ok" than the 62mm TB on a 2.5L - I wouldn't know.
With my 62mm, compared to stock TB, I think crawling at idle or low rpm is easier. WOT is stronger too, obviously.
I dont' know what kind of air-fuel ratio I am getting with the 62mm TB - too lean or too rich. But, good new is that I did pass the CARB emissions ok with the 62mm TB.
Keep in mind I am running the stock airbox/paper filter with the 62mm, not a cone filter or "CAI" set up any more (so, even with the wide 62mm TB, I don't suspect that airflow is now outpacing fuel-flow by too much in my case).
Fairly sure the YJ and TJ 2.5s all use MAP versus MAF, so if you are starting to angle towards a big airflow combo on the 4banger (62mm TB, Cone filter, intake manifold grinding, porting) you'd want to do a MAP adjuster or a Chip (where available).
Sounds like the 4.0L TB is a good thing for you, though. My school never had stuff for my car