Well what i meant by you can use OEM parts from other cars is that the parts can be found cheap/easy (the cars came originally equipped with the parts). Also by these parts being OEM means they should be reliable. Sorry if i'm confusing people into thinking it is a direct bolt on affair, you will definately need to fabricate brackets to mount the supercharger, or reroute the downpipe (easier then fabbing up a whole new manifold) to place the turbo.
Reguardless of which form of forced induction you use, i think an intercooler is necessary. Compressing air heats it up, and then having it touching hot parts (turbo or s/c) does not help keep temps down. An intercooler will help with detonation big time, cooler air = less chance of preignition.
The megasquirt can be run to control fuel only (if there are other things that can control fuel that are out for jeeps you could use those too, just anything besides an FMU), and let the stock computer run the timing. With megasquirt II or MsNs-E you can control the ignition also, which with any form of forced induction can be very helpful. I plan to run fuel only at first, and then start playing with timing down the road.