Yeah, it involves a lot of fitting which is a PITA. I put the old cowl seal on which didn't fit very well when I first installed it but in the cold, it shrank up I guess and fit a lot better then the newer one. I think the old one is a Omix-Ada and the new one was a Fairchild. I used the fairchild seals to rebuild the doors and they worked out great. The outer windshield piece was a little smaller then OEM but worked okay with some RTV added so it wouldn't fall out. I did have to resort to some tricks to coax the cowl seal to tuck under the frame better. I got the bottom to stick out maybe 1/8"-1/4" tops instead of 1/2" like it was. The problem with having it stuck out is the cavity behind is is exposed and water will push right through there like it's nothing.
I was unable to get the other hinge bolts out. I'm going to wait till later or else summer when it's nice and hot and the metal expands a bit. They really shouldn't be locked in there.
I still have to tweak the hard top a little. The seals are getting jammed when the door closes. I'll have to push the top back without moving teh frame too much. I think I need 1/4" to get it to all fit.
First time setting the windshield up. The gap is smaller then before but is still pretty big. The second picture was after some fixing. The gap is about half the size. Still needed some tweaking. I ended up using duct tape and taping the seal in place with the windshield almost vertical so the seal would tuck and resist moving when I folded the windshield down. This really helped a lot especially since I was doing this alone.
Here's a pic to give you an idea of what it looks like under the cowl seal. There is a large void that runs the length of the windshield. The front lip of the cowl seal is around 3/4" before it drops off. If 1/2" is sticking out, you can imaging how little surface is keeping out the water and wind for that matter.
I haven't had the dash in since sometime last year. I removed it when it started raining so I could see where it was coming from.