You are wanting to install into what model Jeep, and which trans? Auto TJs have 23-spline output. If other than TJ with auto, as stated, spline count will be an issue. Another may be the floor in a YJ since the overall size (diameter) is larger than the normal 231. The shift linkage shouldn't be an issue connecting, but adjustment will be necessary. That's not a problem, just something you have to do. Next, like you stated, fixed yoke. However, Rocktracs are not yoked, they are flanged. You could get a yoke or keep the flange. Next, while getting the Rocktrac, look for the rear ds since it will bolt to the flange. You may have to change the yoke on the rear axle to mate to the yoke series of the stock TJ Rubicon tcase. Now, I'm assuming the Rocktrac you are looking for is from a TJ and not the JK. The JK is similar but alas another different case....lol.
Next, depending on your year Jeep model, the TJ Rocktrac has an electronic speedo sensor and not the regular mechanical speedo. Lastly, since you looked the rear output of the case, don't forget the front yoke series as well.