intake/exhaust manifold, motor mounts, brackets, all sensors (oil pressure, PCM water temp in thermostat housing - not sure if the housing is the same so you might need to replace the whole thing instead) & distributor (connector is different for the cam sensor) and possibly waterpump (i'm not sure on this one but never heard a definite answer on it). You'll also need to relocate the temp sensor for the gauge cluster located on the cyl head in the YJ (or drill and tap the head in the same location). the oil pan might give you some trouble if your exhaust downpipe is routed between the oil pan and the transmission belhousing so if you need to replace it you also have to swap the oil pump pickup.
I'm not sure about the clutch, have a look at it make sure the splines match and the pressure plate height is the same (the bellhousing in the Dakota is about 1'' deeper than the on in the YJ AX5, pilot bearing could also be a problem, i have no idea if the AX15 in the Dakota has the same input as the AX5 - if you have doubts and want to keep it simple use the ones from your YJ.