Jeffy,
I had a similar issue that turned out to be spark plug related. If I remember correctly, you are running a wider gap than stock, which provides a hotter, longer spark, but also accelerates electrode tip errosion. The gaps open up (I verified this with feeler gauges) and the motor starts to stumble a bit under load. I have gone back to a stock gap.
As far as the clutch/flywheel/pressure plate possibility, does the stumble only happen when the clutch is starting to grab, or does it continue after you have fully engaged the clutch?