Jeffy is right, the TJ will flash the engine light the same as the YJ will, the flow chart is just different in some ways. The 97 up will get more specific on the problem with a scan tool instead of just the number of flashes.
For the YJ though it's pretty straight forward, if you need help after you get the code with pulling some diag. info post it and I can try to dig it up from ALLDATA for ya.