Did you disconnect your battery so the computer resets and, hopefully, accomodates the mods? (Guessing you probably did or, even if you didn't, the computer has probably adjusted by now)
Adustable MAP sensor is probably not a bad idea now that you have all that intake/exhaust gear on there. It will richen he fuel curve to match the higher air flow. The 2.5L is not Mass Air Flow -- air/fuel ratio is, instead, set by MAP sensor, Intake Air Temp (IAT) sensor and RPM. You can move the IAT sensor off of the intake manifold and down the intake pipe where it's a little cooler, which will likely help the fuel curve a little.
since you're in Kalifornia, you're probably going to have to do a ton of expensive trial and error testing with an adjustable MAP sensor to get emissions square for CARB. If you are game to try it, Adjustable MAP sensors for 2.5L YJs/TJs are sold by Turbo City in OC.
www.turbocity.com