Since the TJ is getting a Hemi, it doesn't really matter in this case. But the series of 3 breaks with the stock manifolds that occurred prior to the 6 Banks breaks -
"I replaced the stock exhaust manifold due to a crack on the back side (facing engine).. I went to Napa and bought another manifiold which cracked in the same area 2 or so months down the road. I went and exhanged this one at Napa for another and it cracked in about 2 months again in the same spot. Frustrated I went a bought a Banks header."
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tends to make me think something is out of line with TJ aside from the exhaust manifolds/headers.
It's anecdotal, but the same pos exhaust manifold has been on mine probably since late 1993 (purchased used in '99) and hasn't given out yet (I know the 4.0L and sometimes 2.5 manifolds are known to have problems though).
It said the TJ has 148k and I'm guessing it was bought in probably in '96 or '97. If it didn't have oem manifold breaks for the 10+ years prior to what it's been dealing with now, I'd personally be thinking (which is probably what you thought long ago): "what related to the TJ changed prior to the onset of the oem exhaust manifold breaks a few years ago?"
Anyway, may your Hemi swap not give you any problems like this TJ manifold/header biz