Hmm.. I have 220K on my 94 YJ,, I rebuilt the engine and warmed it up with a Hesco cam , Good pistons some mild head work heavy duty valve springs and a full B&B at 175K..
My driving style is 5 forward speeds pedal to the floor, 3500 cruise at 75+ and I shift at 6K... a lot..
Its my toy and it does not get treated nicely.. In the sand its been run at 6500 for a full flight out of a bowl many times..
Note: I would not try that with a stock motor..
But I didn't treat it very well for the first 175 either..
I occasionally go run sweep for WRC/Rally America and thats a tough weekend on the thing..
Did you use Hypeutectic coated pistons on the rebuild? Because that is what they had stock from about 93 onward..
The rod angle and the piston design cause a fair amount of slap and they wear a lot if the skirts are not coated.
I literally have driven 3500 miles in a week on the freeway at 75, pulling the Rockys desert etc.. I have 4.56 and 32" tires..
I want a diesel as well .. I want some mileage,, Heck a chevy v8 gets better mileage than the 4cyl ever did..
I run good synthetic oil, change it about ever 5 to 6K and regular unleaded fuel if its below 80 degrees out premium if its over 80.
I also ran Joe Gibbs breakin oil the first 5000 miles changing it out at 2500.
There are well documented issues with newly rebuillt engines and the new green low sulfur/zinc oils.
The Mopar injection is pretty much crap, it pays to keep the injectors clean, and swap the O2 regularly on them (I do mine about every 50K. ) Also the TPS should be checked regularly as if it gets any worn spots it will throw the fuel curve out the window. Also the ECU water temperature sensor it should be checked as well, I find they are good for 75K ish, some go forever some are shot at 20K.. YMMV! The ECU and the gauge are using separate senders (Another Mopar stupidity.. ) the ECU will not fault the sensor unless it goes totally open which almost never happens... SO you need ot check the resistance stone cold and at full temp once in a while.
The 6 does not have any mechanical advantages on the 4 other than a better timing chain.. (No adjuster) And a slightly smoother operating state because the 6 is more naturally balanced than the 4 banger...