It's very common that if you replace the slave or master cylinder, the other will go away shortly thereafter. The new unit creates too much pressure for the old one and the diaphrams begin to leak. This is exactly how mine worked out. I replaced the leaky slave cylinder, and within a couple weeks the master cylinder started leaking. If I'd replaced the whole thing at once, it would have been about the same cost. Plus, I wouldn't have had to jack with those freaking pins.
I would look into getting a replacement master cylinder, line and slave cylinder all at once. It should cost around $150, which is about the same as replacing it all piece by piece, but will likely save you some time.
Also - if you are low on fluid but can't find the leak, look on the inside of the firewall by the pedals. The master usually leaks on the inside of the tub.