There is no difference between any of the YJ's. It's the same process for CJ's as well. If it was me, I think I'd unbolt the whole windshield hinge from the tub since thats the easiest way to get it off. Then you can work the upper hinge bolts on a workbench. Although neither is an easy task. On the YJ's they use tub sealant on the bolts so you will have to reach up behind the dash and clean them off. Otherwise the bolt will just spin once you've loosened it. The best way to get the bolts out is to use a ratchet (air tools are nice) and hold the bolt in place. Unscrew the nut not the bolt. I think they used industrial locktite so some heat might be necessary to break the bolts loose. The ones for the upper hinges will be a bit harder since the nuts are welded to the frame so you have to be a bit more careful not to strip the heads.
Once you get it all apart, I'd consider replacing all the torx head bolts with allen head bolts. These are less likely to strip. Another thing you'll notice is that the windshield frame isn't painted behind the hinges. You may want to have the new frame painted before hand if you're going to paint it. I'd make sure the inner corners where the molding sits have a good coating of paint. They like to rust out at the bottom corners. Installing it should be fairly easy.
As for removing the glass, first remove the molding. On your '95, it will be one large O-ring instead of a cut piece. You'll probably want to use piano wire and slide it under the glass to cut the corner loose. You'll probably want an extra set of hands to hold the glass in place. Those suction tools glass shops use make it a lot easier to handle by one person. If you have the whole thing on a work bench, you won't have to worry about it falling out though.
When you put the glass in make sure you use the right polyurethane sealant and not RTV or silicone. Then use low tack (blue) masking tape to hold the glass against the windshield frame. You might need to use s spacer to hold the glass in place so it doesn't slide. It should be dry enough to drive in a few hours and set in a day.