First I want to say that I have driven my son's Tacoma 4X4 stick shift all over the Eastern Sierra and across many awsome Colorado 4x4 trails (up to 13,000 ft and across boulder fields and beaver dams).
Here are a few examples of my TJ problem:
1. Going over a speed bump straight with constant speed (pushing on the accelerator to maintain speed): When I hit the bump at maybe 10 miles per hour the TJ learches forward then back and it seems like the gas pedal just kind of goes back and forth uncontrolled. THe engine jerks in response. The only way to avoid this is to coast over the speed bump with my foot off the gas pedal. Then the suspension handles the bump just fine.
2. In lo 4 I was able to go smoothly accelerating up a steep rutted hill but when I got to the top and tried to crawl over some deep ruts (straight on flat ground), the learching, jerking and bumping started again. This time taking my foot off the pedal was not an option (or I would get stuck) so I just learched out trying the best I could to hold my foot even on the gas pedal (very difficult).
3. Driving slowly around a parking lot is not an option. The TJ drives well if it is accelearting but not if trying to maintain a slow speed. I need to constantly alternate between putting in the clutch (coasting) and accelerating or the TJ will learch in response to slight gas pedal movements.
In hindsight, the two previous owners sold the TJ because the intended driver (a daughter in one case and a wife in the other) could not drive the stick shift. My 16 year old son has a hard time with it too. At first I thought it was something to get used to. After going off road in lo 4, I know it is a problem that must be fixed.
If someone can explain the gas pedal to engine throtlle system, maybe I could figure out where the problem is. Maybe something in this system is loose or broken (a spring or tensioner, cable)?