I like this setup. Water to air intercooler, separate cooling system, very short intake. With your skills can be easily done, I think.
i did some research before deciding which way to go
advantaged of air to water intercooler (usually called aftercooler): reduced size, reduced plenum size, less tubing routing headache, you can add ice but that is only good for a quick run (not my case)
disadvantage: less efficient (unless you use laminova type but then there is a pressure drop and you need a large radiator to keep up with the heat - a small one will be good for short bursts and not constant boost), way more expensive
advantage of air to air (i use a bar and plate type): efficiency, less pressure drop at same temp drop, cheap
disadvantage: more complicated to install, larger plenum, more piping to be routed in and out of the i/c
usually you will see the s/c with an air to water intercooler and the turbo with an air to air but i did find that some offer air to air kits with good results so due to cost and few other factors that was my choice in the end.