So anyway, after replacing the cowl seal I thought I was good. Light rain wasn't a problem. Well we had a downpour that lasted all might and into the next day. Went out to the Jeep and there is water on teh floor again. Not nearly as bad as before though. It wasn't pouring down my dash this time. It looks like it may be the cowl seam as it only seemed to be leaking on the driverside and against the side of the sheet metal. I had put some clear silicone down in the gap years ago but I think it needs to be redone with some polyurethane this time. Who was stupid enough to design the body so there is a seam at the cowl? They should get a sack of doorknobs. I'll try some duct tape and see if that stops it since it's supposed to rain again soon and the poly won't have time to cure in the cold...