I have a '94 2.5 YJ with the manifold on the left.
Today I swapped my TB with one of a 4.0L.
The flange opening in the manifold is about 56mm and the outlet of the 4.0L TB is 56mm.
By only swapping the TB's I increase the minimum air intake diameter from 48mm (outlet opening from the 2.5L TB) to 56mm.
I drove just a bit along the countryside today so cannot yet tell if it is a big improvement on the highway with a strong head wind.
I guess if you go to a full bore without changing the injectors, fuelpressure valve and possible O2 sensor, you might not gain extra power?